Standard Operating Procedure for Analyst Training on LC-MS/MS Operation in BA/BE Studies
| Department | BA-BE Studies |
|---|---|
| SOP No. | SOP/BA-BE/167/2025 |
| Supersedes | SOP/BA-BE/167/2022 |
| Page No. | Page 1 of 11 |
| Issue Date | 17/04/2025 |
| Effective Date | 20/04/2025 |
| Review Date | 17/04/2026 |
1. Purpose
To establish a structured and compliant training program for analysts on the operation, maintenance, and troubleshooting of LC-MS/MS instruments used in bioanalytical studies for BA/BE projects.
2. Scope
This SOP applies to all analysts involved in operating LC-MS/MS systems (e.g., Sciex, Agilent, Waters) for plasma sample analysis in bioequivalence and bioavailability studies at the bioanalytical laboratory.
3. Responsibilities
- Training Coordinator: Schedules
4. Accountability
The Head of Bioanalytical Department is accountable for ensuring training is completed, assessed, and documented prior to analyst authorization on LC-MS/MS instruments.
5. Procedure
5.1 Training Enrollment and Planning
- New analysts or analysts assigned to a new LC-MS/MS platform must be enrolled in training via Annexure-1: Training Request Form.
- Assign a qualified mentor who has minimum 6 months hands-on experience with the instrument.
- Define training timeline (typically 4–6 weeks) and topics in accordance with the Training Curriculum.
5.2 Training Curriculum
- The training program shall include modules on:
- System start-up and shutdown procedures
- Instrument calibration and tuning
- Sample loading and sequence creation
- Data acquisition and processing
- Manual integration and data review
- Routine maintenance and troubleshooting
- Audit trail review and data backup
- The trainee shall perform all steps under direct observation of the mentor initially, followed by supervised repetition.
5.3 Evaluation of Competency
- Upon completion, the mentor shall conduct a theoretical and practical assessment using Annexure-2: Training Evaluation Checklist.
- Analyst must demonstrate:
- Fluent software navigation (e.g., Analyst, MassLynx)
- Accurate sequence setup and sample ID management
- Troubleshooting for pressure drops, signal loss, or communication errors
5.4 Documentation
- All training steps shall be recorded and signed in Annexure-3: Training Record Sheet.
- Assessment scores and trainer recommendations must be recorded.
- Analyst shall not operate instrument independently until certified in Annexure-4: Certificate of Completion.
5.5 Refresher and Cross-Training
- Annual refresher training is mandatory or in case of:
- Major software upgrades
- Instrument model change
- Extended absence (>3 months)
- Cross-training to other LC-MS/MS platforms must follow this SOP again.
6. Abbreviations
- BA/BE: Bioavailability/Bioequivalence
- LC-MS/MS: Liquid Chromatography-Tandem Mass Spectrometry
- QA: Quality Assurance
- SOP: Standard Operating Procedure
7. Documents
- Training Request Form – Annexure-1
- Training Evaluation Checklist – Annexure-2
- Training Record Sheet – Annexure-3
- Certificate of Completion – Annexure-4
8. References
- ICH M10: Bioanalytical Method Validation
- FDA Guidance on Bioanalytical Method Validation
- Internal Bioanalytical Training Policy
9. SOP Version
Version: 2.0
10. Approval Section
| Prepared By | Checked By | Approved By | |
|---|---|---|---|
| Signature | |||
| Date | |||
| Name | |||
| Designation | |||
| Department |
11. Annexures
Annexure-1: Training Request Form
| Request Date | 15/04/2025 |
|---|---|
| Analyst Name | Sunita Reddy |
| Instrument Assigned | Sciex QTRAP 6500+ |
| Trainer Assigned | Rajesh Kumar |
Annexure-2: Training Evaluation Checklist
| Module | Status | Comments |
|---|---|---|
| System Start/Stop | Completed | Clear understanding |
| Tuning | Completed | Proficient |
| Sequence Setup | Completed | Accurate |
Annexure-3: Training Record Sheet
| Date | Activity | Performed By | Trainer Initials |
|---|---|---|---|
| 10/04/2025 | Demo: LC pump setup | Sunita Reddy | RK |
| 12/04/2025 | Sample injection and acquisition | Sunita Reddy | RK |
Annexure-4: Certificate of Completion
This certifies that Sunita Reddy has successfully completed training on Sciex QTRAP 6500+ LC-MS/MS system and is authorized to independently operate the instrument for routine bioanalytical work.
Date of Completion: 17/04/2025
Authorized By: Head – Bioanalytical Department
Revision History:
| Revision Date | Revision No. | Details | Reason | Approved By |
|---|---|---|---|---|
| 01/01/2022 | 1.0 | Initial issue | New SOP | QA Head |
| 17/04/2025 | 2.0 | Added evaluation and certification steps | Compliance with ICH M10 | QA Head |